Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs1275745 chr14:70131634 C/G 3.6E-5 515 11.23 23.27 21.48 KM Plot
HNSC rs12914843 chr15:31230311 C/T 1.15E-7 508 21.93 20.83 7.5 KM Plot
HNSC rs12931566 chr16:69200931 A/T 7.77E-16 501 21.5 19.63 2.07 KM Plot
HNSC rs12952251 chr17:64283702 G/C 1.73E-5 514 21.37 23.1 15.95 KM Plot
HNSC rs12992141 chr2:99922401 A/G 4.0E-6 504 7.17 20.48 22.2 KM Plot
HNSC rs12993310 chr2:99849336 T/G 1.95E-8 513 6.83 19.33 22.33 KM Plot
HNSC rs13032885 chr2:99875744 G/A 1.16E-10 514 6.83 20.78 22.2 KM Plot
HNSC rs13405400 chr2:100088332 C/G 3.04E-6 514 22.42 20.1 7.17 KM Plot
HNSC rs13409359 chr2:100050740 A/C 2.99E-6 513 22.42 20.15 7.17 KM Plot
HNSC rs13415713 chr2:100082145 A/T 3.04E-6 514 22.42 20.1 7.17 KM Plot
HNSC rs13416265 chr2:100061324 C/T 2.5E-6 514 22.5 20.15 7.17 KM Plot
HNSC rs13419448 chr2:100052917 T/C 2.97E-6 514 22.33 20.15 7.17 KM Plot
HNSC rs13420087 chr2:100092636 C/A 2.17E-6 514 22.33 20.15 7.17 KM Plot
HNSC rs13426758 chr2:100039956 C/T 3.04E-8 515 22.5 20.15 7 KM Plot
HNSC rs13429185 chr2:100045783 C/T 2.94E-6 511 22.27 20.15 7.17 KM Plot